stereo.plots.PlotTimeSeriesAnalysis.time_series_tree_plot#

PlotTimeSeriesAnalysis.time_series_tree_plot(use_result='annotation', method='sankey', edges=None, dot_size_scale=300, palette='tab20', ylabel_pos='left', width=6, height=6, x_label=None, y_label=None)[source]#

a tree plot to display the cell amounts changes during time series, trajectory can be add to plot by edges.

Parameters:

  • use_result (Optional[str]) – the col in obs representing celltype or clustering.

  • method (Optional[str]) – choose from sankey and dot, choose the way to display.

  • edges (Optional[str]) – a parameter to add arrow to illustrate development trajectory. if edges==’page’, use paga result, otherwise use a list of tuple of celltype pairs as father node and child node. # flake8: noqa

  • dot_size_scale (Optional[int]) – only used for method=’dot’, to adjust dot relatively size.

  • palette (Optional[str]) – color palette to paint different celltypes.

  • ylabel_pos (Optional[str]) – position to plot y labels.

  • width (Optional[float]) – width of figure.

  • height (Optional[float]) – height of figure.

  • x_label (Optional[str]) – the x label.

  • y_label (Optional[str]) – the y label.

Returns:

a fig object