stereo.plots.PlotTimeSeries.TVG_volcano_plot#

PlotTimeSeries.TVG_volcano_plot(use_col, branch, x_label=None, y_label=None, title=None)[source]#

Use fuzzy C means cluster method to cluster genes based on 1-p_value of celltypes in branch

Parameters:

  • use_col (str) – the col in obs representing celltype or clustering.

  • branch (List[str]) – celltypes order in use_col.

  • x_label (Optional[str]) – the x label.

  • y_label (Optional[str]) – the y label.

  • title (Optional[str]) – title of figure.

Returns:

a volcano plot display time variable gene(TVG).