stereo.plots.PlotGenesInPseudotime.plot_genes_in_pseudotime#
- PlotGenesInPseudotime.plot_genes_in_pseudotime(marker_genes_res_key='marker_genes', group=None, sort_by='scores', topn=5, cmap='plasma', width=None, height=None, size=30, marker='.')[source]#
Distribution of expression count of marker genes along with pseudotime
- Parameters:
marker_genes_res_key (
str
) – Specifies the key to get result offind_marker_genes
, defaults to ‘marker_genes’group (
Optional
[str
]) – Sepcifies the cell type to plot, defaults to Nonesort_by (
Literal
['scores'
,'pvalues'
,'pvalues_adj'
,'log2fc'
,'pct'
,'pct_rest'
]) – Get top N marker genes in this order, defaults to ‘scores’topn (
int
) – Get top N marker genes, defaults to 5cmap (
str
) – Color map, definded in matplotlib, defaults to ‘plasma’width (
Optional
[int
]) – The figure width in pixels, defaults to Noneheight (
Optional
[int
]) – The figure height in pixels, defaults to Nonesize (
int
) – The size of markers in plot, defaults to 30marker (
str
) – The style of markers in plot, defaults to ‘.’