Stereopy - Spatial transcriptomics analysis in Python

Stereopy is a tool for the analysis and visualization of spatial transcriptomics data, such as stereo-seq data. It provides a series of analysis of spatial omics, and will be added to the tissue image related analysis later.

General

• Installation
• API
  • io: reader
  • preprocess: pp
  • tools: tl
  • plots: pt

Tutorials

• Quick start
  • Read the raw data of Stereo-Seq
  • Preprocessing
  • Dimensionality reduction
  • Clustering
  • Find marker genes
  • spatial pattern score
• Examples