stereo.algorithm.cell_pose.Cellpose.__init__#
- Cellpose.__init__(img_path, out_path, photo_size=2048, photo_step=2000, model_type='cyto2', dmin=10, dmax=40, step=10, gpu=False)#
- Parameters:
img_path (
str
) – input file path.out_path (
str
) – file save path.photo_size (
Optional
[int
]) – input image size, the value of the microscope fov image setting, default is 2048.photo_step (
Optional
[int
]) – the step size of each image processing, default is 2000model_type (
Optional
[str
]) –the type of model to cellpost, default is ‘cyto2’, available values include:
’cyto’: cytoplasm model.’nuclei’: nucleus model.’cyto2’: default and recommended model, optimized on the basis of the cyto model.dmin (
Optional
[int
]) – cell minimum diameter, default is 10.dmax (
Optional
[int
]) – cell diameter, default is 40.step (
Optional
[int
]) – the step size of cell diameter search, default is 10.gpu (
Optional
[bool
]) – Whether to use gpu acceleration, the default is False.