stereo.plots.PlotPaga.paga_plot#

PlotPaga.paga_plot(adjacency='connectivities_tree', threshold=0.01, layout='fr', random_state=0, cmap='tab20', ax=None, width=None, height=None, dot_size=30)[source]#

abstract paga plot for the paga result.

Parameters:

  • adjacency (str) – keyword to use for paga or paga tree, available values include ‘connectivities’ and ‘connectivities_tree’. # noqa

  • threshold (float) – prune edges lower than threshold.

  • layout (Literal['fr', 'drl', 'kk', 'grid_fr', 'lgl', 'rt', 'rt_circular', 'fa']) – the method to layout each node.

  • random_state (int) – to control the random initializatio.

  • cmap (str) – colormap to use, default with tab20.

  • ax (Optional[Axes]) – subplot to plot.

  • width (Optional[int]) – the figure width.

  • height (Optional[int]) – the figure height.

  • dot_size (Optional[int]) – The marker size in points**2 (typographic points are 1/72 in.). Default is 30.