stereo.algorithm.cell_cell_communication.PlotCellCellCommunication.ccc_circos_plot#

PlotCellCellCommunication.ccc_circos_plot(separator_cluster='|', cluster_pair=None, palette='RdYlBu_r', width=8, height=8, res_key='cell_cell_communication')[source]#

Circos plot of number of interactions in each cluster pairs.

Parameters:

  • separator_cluster (str) – separator used for cell cluster pairs.

  • cluster_pair (Optional[list]) – if None, use all cluster pairs in the significant result; else list selected cluster pairs used in the plot. # noqa

  • palette (str) – colormap used.

  • width (int) – the figure width in pixels.

  • height (int) – the figure height in pixels.

  • res_key (str) – the key which specifies the cell cell communication result in data.tl.result, defaults to ‘cell_cell_communication’. # noqa