stereo.plots.PlotTimeSeriesAnalysis.ms_paga_time_series_plot#
- PlotTimeSeriesAnalysis.ms_paga_time_series_plot(use_col, groups=None, width=6, height=6, palette='tab20', link_alpha=0.5, spot_size=1, dpt_col='dpt_pseudotime')[source]#
spatial trajectory plot for paga in time_series multiple slice dataset
- Parameters:
use_col (
str
) – the col in obs representing celltype or clustering.groups (
Optional
[str
]) – the particular celltype that will show, default None means show all the celltype in use_col.height (
Optional
[float
]) – height of figure.width (
Optional
[float
]) – width of figure.palette (
Optional
[str
]) – color palette to paint different celltypes.link_alpha (
Optional
[float
]) – alpha of the bezierpath, from 0 to 1.spot_size (
Optional
[int
]) – the size of each cell scatter.dpt_col (
Optional
[str
]) – the col in obs representing dpt pseudotime.
- Returns:
a fig object.