stereo.plots.ClustersGenesHeatmap.clusters_genes_heatmap#

ClustersGenesHeatmap.clusters_genes_heatmap(cluster_res_key, dendrogram_res_key=None, gene_names=None, groups=None, width=None, height=None, colormap='Greens', standard_scale='gene')[source]#

Heatmap representing mean expression of genes on each cell cluster.

Parameters:

cluster_res_key (str) – the key to get cluster result.
dendrogram_res_key (Optional[str]) – the key to get dendrogram result, defaults to None to avoid show dendrogram on plot.
gene_names (Optional[Sequence[str]]) – a list of genes to show, defaults to None to show all genes.
groups (Optional[Sequence[str]]) – a list of cell clusters to show, defaults to None to show all cell clusters.
width (Optional[int]) – the figure width in pixels, defaults to None.
height (Optional[int]) – the figure height in pixels, defaults to None.
colormap (str) – colormap used on plot, defaults to ‘Greens’
standard_scale (str) – Whether or not to standardize that dimension between 0 and 1, meaning for each gene or cluster, subtract the minimum and divide each by its maximum, defaults to ‘gene’