Image: im#

Import Stereopy :

import stereo as st

The module works on image files, generating results of tissue or cell segmentation that you are interested in.

image.pyramid.merge_pyramid(h5_path, ...)

Merge image patches back to large image.

image.pyramid.create_pyramid(img_path, ...)

Create image pyramid and save to .h5.

image.segmentation.segment.cell_seg(...[, ...])

Cell segmentation on regist.tif/mask.tif by deeplearning model.

image.segmentation_deepcell.segment.cell_seg_deepcell(...)

Cell segmentation on regist.tif by deep cell model.

algorithm.cell_pose.Cellpose.__init__(...[, ...])

type img_path:

str

image.tissue_cut.SingleStrandDNATissueCut.__init__([...])

Tissue Segmentation based on regist.tif

image.tissue_cut.RNATissueCut.__init__([...])

Tissue Segmentation based on raw.gef/raw.gem.