stereo.plots.PlotTimeSeries.boxplot_transit_gene#

PlotTimeSeries.boxplot_transit_gene(use_col, branch, genes, vmax=None, vmin=None, title=None)[source]#

show a boxplot of a specific gene expression in branch of use_col

Parameters:

use_col (str) – the col in obs representing celltype or clustering.
branch (List[str]) – celltypes order in use_col.
genes (List[str]) – specific gene or gene list to plot.
vmin (vmax,) – max and min value to plot, default None means auto calculate.
title (Optional[str]) – title of figure.

Returns:

a boxplot fig of one or several gene expression in branch of use_col.