stereo.core.StPipeline.normalize_total#
- StPipeline.normalize_total(target_sum=10000, inplace=True, res_key='normalize_total')[source]#
Normalize total counts over all genes per cell such that each cell has the same total count after normalization.
- Parameters:
target_sum (
int
) – the number of total counts per cell after normalization, ifNone
, each cell has a total count equal to the median of total counts for all cells before normalization.inplace (
bool
) – whether to inplcae previous data or get a new express matrix after normalize_total.res_key (
str
) – the key to get targeted result fromself.result
.
- Returns:
An object of StereoExpData.
Depending on
inplace
, ifTrue
, the data will be replaced by those normalized