stereo.io.anndata_to_stereo#

stereo.io.anndata_to_stereo(andata, use_raw=False, spatial_key=None, resolution=500)[source]#

Transform the Anndata object into StereoExpData format.

Parameters:

  • andata (AnnData) – the input Anndata object.

  • use_raw (bool) – use anndata.raw.X if True, otherwise anndata.X.

  • spatial_key (Optional[str]) – use .obsm['spatial_key'] as coordiante information.

  • resolution (Optional[int]) – the resolution of chip, default 500nm.

Return type:

An object of StereoExpData.