stereo.plots.PlotCollection.marker_genes_text

PlotCollection.marker_genes_text(res_key, groups='all', markers_num=20, sort_key='scores', ascend=False, fontsize=8, ncols=4, sharey=True, width=None, height=None, **kwargs)[source]

Scatter plot of maker genes.

Parameters:

  • res_key (str) – the result key of marker genes.

  • groups (Union[str, Sequence[str]]) – the group names.

  • markers_num (Optional[int]) – top N genes to show in each cluster.

  • sort_key (Optional[str]) – the sort key for getting top N marker genes, default 'scores'.

  • ascend (Optional[bool]) – whether to sort by ascending.

  • fontsize (Optional[int]) – the font size.

  • ncols (Optional[int]) – number of plot columns.

  • sharey (Optional[bool]) – share scale or not.

  • width (Optional[int]) – the figure width in pixels.

  • height (Optional[int]) – the figure height in pixels.

  • out_path – the path to save the figure.

  • out_dpi – the dpi when the figure is saved.