stereo.plots.PlotCollection.interact_annotation_cluster

PlotCollection.interact_annotation_cluster(res_cluster_key, res_marker_gene_key, res_key, inline=True, width=700, height=500)[source]

Interactive spatial scatter after clustering.

Parameters:

  • res_cluster_key (str) – the result key of annotation.

  • res_marker_gene_key (str) – the result key of marker genes.

  • res_key (str) – the key for getting the result from the self.result.

  • inline (Optional[bool]) – show in notebook.

  • width (Optional[int]) – the figure width.

  • height (Optional[int]) – the figure height.

  • reorganize_coordinate –

    if the data is merged from several slices, whether to reorganize the coordinates of the obs(cells), if set it to a number, like 2, the coordinates will be reorganized to 2 columns on coordinate system as below:

    data1 data2
    data3 data4
    data5 …
    … …

    if set it to False, the coordinates will not be changed.

  • horizontal_offset_additional – the additional offset between each slice on horizontal direction while reorganizing coordinates.

  • vertical_offset_additional – the additional offset between each slice on vertical direction while reorganizing coordinates.