stereo.plots.PlotTimeSeriesAnalysis.ms_paga_time_series_plot

PlotTimeSeriesAnalysis.ms_paga_time_series_plot(use_col, groups=None, width=6, height=6, palette='tab20', link_alpha=0.5, spot_size=1, dpt_col='dpt_pseudotime')[source]

spatial trajectory plot for paga in time_series multiple slice dataset

Parameters:

  • use_col (str) – the col in obs representing celltype or clustering.

  • groups (Optional[str]) – the particular celltype that will show, default None means show all the celltype in use_col.

  • height (Optional[float]) – height of figure.

  • width (Optional[float]) – width of figure.

  • palette (Optional[str]) – color palette to paint different celltypes.

  • link_alpha (Optional[float]) – alpha of the bezierpath, from 0 to 1.

  • spot_size (Optional[int]) – the size of each cell scatter.

  • dpt_col (Optional[str]) – the col in obs representing dpt pseudotime.

Returns:

a fig object.