stereo.algorithm.st_gears.StGears.stack_slices_pairwise_rigid¶

StGears.stack_slices_pairwise_rigid(fil_pc=20, set_as_position=False, res_key='st_gears')[source]¶

Rigidly aligning sections using Procrustes Analysis

Parameters:

fil_pc (int) – Percentage of ranked probabilities in transition matrix, after which probabilities will be filtered, defaults to 20
set_as_position (bool) – Whether to use the new coordinates calculated by this method as the cells/bins position, defaults to False
res_key (str) – Must be the same as res_key in main function, defaults to ‘st_gears’