stereo.io.anndata_to_stereo¶

stereo.io.anndata_to_stereo(andata, use_raw=False, spatial_key=None, resolution=500)[source]¶

Transform the Anndata object into StereoExpData format.

Parameters:

andata (AnnData) – the input Anndata object.
use_raw (bool) – use anndata.raw.X if True, otherwise anndata.X.
spatial_key (Optional[str]) – use .obsm['spatial_key'] as coordiante information.
resolution (Optional[int]) – the resolution of chip, default 500nm.

Return type:

An object of StereoExpData.