stereo.plots.PlotTimeSeries.fuzz_cluster_plot

PlotTimeSeries.fuzz_cluster_plot(use_col, branch, threshold='p99.98', summary_trend=True, n_col=None, width=None, height=None, x_label=None, y_label=None, title=None)[source]

a line plot to show the trend of each cluster of fuzzy C means

Parameters:

  • use_col (str) – the col in obs representing celltype or clustering.

  • branch (str) – celltypes order in use_col.

  • summary_trend (Optional[bool]) – summary trend in use_col.

  • threshold (Optional[str]) – the threshold of cluster score to plot.

  • n_col (Optional[int]) – number of columns to display each cluster plot.

  • width (Optional[float]) – width of figure.

  • height (Optional[float]) – height of figure.

  • x_label (Optional[str]) – the x label.

  • y_label (Optional[str]) – the y label.

  • title (Optional[str]) – title of figure.

Returns:

a list of gene list of each cluster.