stereo.algorithm.spa_track.SpaTrack.set_start_cells

SpaTrack.set_start_cells(select_way, cell_type=None, start_point=None, spatial_key=None, split=False, n_clusters=2, n_neigh=5)[source]

Use coordinates or cell type to manually select starting cells.

Parameters:

  • select_way (Literal['coordinates', 'cell_type']) – Ways to select starting cells. cell_type: select by cell type. coordinates: select by coordinates.

  • cell_type (Optional[str]) – Restrict the cell type of starting cells, defaults to None

  • start_point (Optional[Tuple[int, int]]) – The coordinates of the start point in coordinates mode, defaults to None

  • spatial_key (Optional[str]) – The key to get position information of cells, by default, the data.spatial_key will be used.

  • split (bool) – Whether to split the specific type of cells into several small clusters according to cell density, defaults to False

  • n_clusters (int) – The number of cluster centers after splitting, defaults to 2

  • n_neigh (int) – The number of neighbors next to the start point/cluster center selected as the starting cell, defaults to 5

Returns:

The indices of the starting cells