stereo.core.StPipeline
======================

.. currentmodule:: stereo.core

.. autoclass:: StPipeline

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~StPipeline.__init__
      ~StPipeline.adjusted_rand_score
      ~StPipeline.annotation
      ~StPipeline.batches_integrate
      ~StPipeline.cal_qc
      ~StPipeline.disksmooth_zscore
      ~StPipeline.filter_by_clusters
      ~StPipeline.filter_by_hvgs
      ~StPipeline.filter_cells
      ~StPipeline.filter_coordinates
      ~StPipeline.filter_genes
      ~StPipeline.filter_marker_genes
      ~StPipeline.find_marker_genes
      ~StPipeline.gaussian_smooth
      ~StPipeline.get_neighbors_res
      ~StPipeline.highly_variable_genes
      ~StPipeline.leiden
      ~StPipeline.log1p
      ~StPipeline.louvain
      ~StPipeline.lr_score
      ~StPipeline.neighbors
      ~StPipeline.normalize_total
      ~StPipeline.pca
      ~StPipeline.phenograph
      ~StPipeline.quantile
      ~StPipeline.raw_checkpoint
      ~StPipeline.reset_key_record
      ~StPipeline.reset_raw_data
      ~StPipeline.review_key_record
      ~StPipeline.scale
      ~StPipeline.sctransform
      ~StPipeline.set_layer
      ~StPipeline.silhouette_score
      ~StPipeline.spatial_hotspot
      ~StPipeline.spatial_neighbors
      ~StPipeline.spatial_pattern_score
      ~StPipeline.subset_by_hvg
      ~StPipeline.umap
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~StPipeline.key_record
      ~StPipeline.raw